This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Glycosylated BMP2 homodimer |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 31 | a: 62.743 Å | b: 62.743 Å | c: 126.350 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.68 Å | Reflections | 15473 | Test set | 776 (5.0%) | ||
R | 0.1750 | R-free | 0.2430 | ||||
According to PDB-REDO | |||||||
Resolution | 2.68 Å | Reflections | 15473 | Test set | 776 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1995 | 0.1810 |
R-free | 0.2499 | 0.2303 |
Bond length RMS Z-score | 0.631 | 0.532 |
Bond angle RMS Z-score | 1.061 | 0.815 |
Model quality | ||
Ramachandran plot normality | -2.875 17 | -2.959 17 |
Rotamer normality | -3.367 34 | -2.948 41 |
Coarse packing | -1.222 11 | -0.982 16 |
Fine packing | -2.263 9 | -2.138 11 |
Bump severity | 0.659 1 | 0.664 1 |
Hydrogen bond satisfaction | 0.809 6 | 0.810 6 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 0 |
Waters removed | 3 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 24 |
Residues fitting density worse | 0 |