Structure of human galectin-1 tandem-repeat mutant with lactose |
This entry was created with PDB-REDO version 8.07. |
From original header | |||||||
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Spacegroup | P 21 21 2 | a: 67.380 Å | b: 95.640 Å | c: 95.640 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.38 Å | Reflections | 50685 | Test set | 2571 (5.1%) | ||
R | 0.1832 | R-free | 0.2190 | ||||
According to PDB-REDO | |||||||
Resolution | 1.38 Å | Reflections | 50685 | Test set | 2571 (5.1%) | ||
Twin | false | Radiation damage | 29 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1918 | 0.2195 |
R-free | 0.2328 | 0.2340 |
Bond length RMS Z-score | 1.440 | 0.427 |
Bond angle RMS Z-score | 0.893 | 0.619 |
Model quality | ||
Ramachandran plot normality | -1.542 41 | -1.557 41 |
Rotamer normality | -0.300 85 | 0.827 97 |
Coarse packing | 1.268 90 | 1.281 90 |
Fine packing | 0.068 84 | -0.173 79 |
Bump severity | 0.016 43 | 0.012 51 |
Hydrogen bond satisfaction | 0.941 94 | 0.942 94 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains flipped | 0 |
Waters removed | 8 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 2 |
Residues fitting density worse | 8 |