human galectin-16 R55N |
This entry was created with PDB-REDO version 8.07. |
From original header | |||||||
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Spacegroup | C 1 2 1 | a: 55.817 Å | b: 34.333 Å | c: 34.333 Å | α: 90.00° | β: 102.06° | γ: 90.00° |
Resolution | 1.49 Å | Reflections | 20568 | Test set | 1991 (9.7%) | ||
R | 0.1756 | R-free | 0.2083 | ||||
According to PDB-REDO | |||||||
Resolution | 1.49 Å | Reflections | 20568 | Test set | 1991 (9.7%) | ||
Twin | false | Radiation damage | 98 Data shows severe radiation damage | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1809 | 0.1668 |
R-free | 0.2088 | 0.1990 |
Bond length RMS Z-score | 0.577 | 0.730 |
Bond angle RMS Z-score | 0.743 | 0.815 |
Model quality | ||
Ramachandran plot normality | -0.656 65 | -0.843 60 |
Rotamer normality | -1.045 71 | -0.070 89 |
Coarse packing | 1.047 86 | 0.951 84 |
Fine packing | -0.113 81 | -0.177 79 |
Bump severity | 0.014 47 | 0.009 59 |
Hydrogen bond satisfaction | 0.936 91 | 0.934 90 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 2 |
Side chains flipped | 0 |
Waters removed | 20 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 3 |
Residues fitting density worse | 0 |