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Crystal structure of Hexokinase from Eimeria tenella |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 68.000 Å | b: 77.050 Å | c: 105.150 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.37 Å | Reflections | 115610 | Test set | 1991 (1.7%) | ||
R | 0.1382 | R-free | 0.1606 | ||||
According to PDB-REDO | |||||||
Resolution | 1.37 Å | Reflections | 115610 | Test set | 1991 (1.7%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1403 | 0.1416 |
R-free | 0.1629 | 0.1665 |
Bond length RMS Z-score | 1.619 | 0.786 |
Bond angle RMS Z-score | 0.903 | 0.749 |
Model quality | ||
Ramachandran plot normality | 0.497 89 | 0.170 84 |
Rotamer normality | -0.130 91 | 0.179 94 |
Coarse packing | 1.807 99 | 1.722 99 |
Fine packing | -1.490 32 | -1.313 40 |
Bump severity | 0.003 82 | 0.002 87 |
Hydrogen bond satisfaction | 0.909 63 | 0.914 70 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 7 |
Side chains flipped | 0 |
Waters removed | 138 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 4 |
Residues fitting density worse | 7 |