This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to sialyl lewisX |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 61 | a: 137.417 Å | b: 137.417 Å | c: 177.807 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.50 Å | Reflections | 65604 | Test set | 3458 (5.3%) | ||
R | 0.1740 | R-free | 0.2050 | ||||
According to PDB-REDO | |||||||
Resolution | 2.50 Å | Reflections | 65604 | Test set | 3458 (5.3%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1848 | 0.1768 |
R-free | 0.2088 | 0.2058 |
Bond length RMS Z-score | 0.219 | 0.426 |
Bond angle RMS Z-score | 0.543 | 0.675 |
Model quality | ||
Ramachandran plot normality | -1.755 34 | -2.146 27 |
Rotamer normality | -1.121 75 | -1.673 64 |
Coarse packing | -0.034 60 | -0.180 52 |
Fine packing | -1.769 21 | -1.638 26 |
Bump severity | 0.554 1 | 0.209 5 |
Hydrogen bond satisfaction | 0.855 15 | 0.864 19 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 15 |
Side chains flipped | 0 |
Waters removed | 31 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 4 |
Residues fitting density worse | 0 |