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Crystal structure of H7 hemagglutinin mutant H7-SVTQ ( A138S, P221T, L226Q) with 3'SLN |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | H 3 2 | a: 116.101 Å | b: 116.101 Å | c: 296.275 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.71 Å | Reflections | 18284 | Test set | 942 (5.2%) | ||
R | 0.2203 | R-free | 0.2637 | ||||
According to PDB-REDO | |||||||
Resolution | 2.71 Å | Reflections | 18284 | Test set | 942 (5.2%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2399 | 0.2292 |
R-free | 0.2788 | 0.2766 |
Bond length RMS Z-score | 0.453 | 0.243 |
Bond angle RMS Z-score | 0.611 | 0.467 |
Model quality | ||
Ramachandran plot normality | -2.884 17 | -3.638 11 |
Rotamer normality | -3.005 40 | -3.167 37 |
Coarse packing | -0.689 27 | -0.704 27 |
Fine packing | -1.738 22 | -1.803 20 |
Bump severity | 0.243 4 | 0.230 5 |
Hydrogen bond satisfaction | 0.852 14 | 0.841 11 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 7 |
Side chains flipped | 0 |
Waters removed | 6 |
Peptides flipped | 2 |
Chiralities fixed | 0 |
Residues fitting density better | 5 |
Residues fitting density worse | 0 |