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Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 38.739 Å | b: 54.641 Å | c: 67.944 Å | α: 90.00° | β: 97.73° | γ: 90.00° |
Resolution | 1.85 Å | Reflections | 23796 | Test set | 1162 (4.9%) | ||
R | 0.1761 | R-free | 0.2328 | ||||
According to PDB-REDO | |||||||
Resolution | 1.85 Å | Reflections | 23796 | Test set | 1162 (4.9%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1813 | 0.1750 |
R-free | 0.2392 | 0.2290 |
Bond length RMS Z-score | 1.234 | 0.295 |
Bond angle RMS Z-score | 0.923 | 0.510 |
Model quality | ||
Ramachandran plot normality | -1.427 44 | -1.197 50 |
Rotamer normality | -2.212 46 | -1.003 72 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 9 |
Side chains flipped | 1 |
Waters removed | 4 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 7 |
Residues fitting density worse | 0 |