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Teneurin 2 Partial Extracellular Domain |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 88.560 Å | b: 452.560 Å | c: 146.360 Å | α: 90.00° | β: 95.12° | γ: 90.00° |
Resolution | 2.38 Å | Reflections | 429571 | Test set | 21455 (5.0%) | ||
R | 0.2250 | R-free | 0.2420 | ||||
According to PDB-REDO | |||||||
Resolution | 2.38 Å | Reflections | 429571 | Test set | 21455 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2522 | 0.2374 |
R-free | 0.2685 | 0.2726 |
Bond length RMS Z-score | 0.520 | 0.567 |
Bond angle RMS Z-score | 0.886 | 0.817 |
Model quality | ||
Ramachandran plot normality | -0.960 54 | -2.055 28 |
Rotamer normality | -3.346 34 | -3.665 30 |
Coarse packing | 0.129 68 | -0.006 62 |
Fine packing | -0.594 68 | -0.797 61 |
Bump severity | 0.364 3 | 0.382 2 |
Hydrogen bond satisfaction | 0.880 28 | 0.882 30 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 146 |
Side chains flipped | 0 |
Waters removed | 4 |
Peptides flipped | 47 |
Chiralities fixed | 0 |
Residues fitting density better | 412 |
Residues fitting density worse | 23 |