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Structure of 14-3-3 beta/alpha bound to O-ClcNAc peptide |
This entry was created with PDB-REDO version 7.31. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 82.670 Å | b: 71.450 Å | c: 95.759 Å | α: 90.00° | β: 111.61° | γ: 90.00° |
Resolution | 3.00 Å | Reflections | 20501 | Test set | 1980 (9.7%) | ||
R | 0.2150 | R-free | 0.2680 | ||||
According to PDB-REDO | |||||||
Resolution | 3.00 Å | Reflections | 20501 | Test set | 1980 (9.7%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2270 | 0.2015 |
R-free | 0.2792 | 0.2450 |
Bond length RMS Z-score | 0.194 | 0.432 |
Bond angle RMS Z-score | 0.387 | 0.649 |
Model quality | ||
Ramachandran plot normality | -5.496 4 | -2.562 21 |
Rotamer normality | -4.053 25 | -3.100 38 |
Coarse packing | 0.677 88 | 1.423 97 |
Fine packing | 0.283 87 | 1.247 96 |
Bump severity | 0.176 6 | 0.057 17 |
Hydrogen bond satisfaction | 0.902 53 | 0.906 58 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 28 |
Waters removed | 0 |
Peptides flipped | 10 |
Chiralities fixed | 0 |
Residues fitting density better | 41 |
Residues fitting density worse | 1 |