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Structure of human 14-3-3 gamma bound to O-GlcNAc peptide |
This entry was created with PDB-REDO version 7.31. |
From original header | |||||||
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Spacegroup | P 41 21 2 | a: 122.270 Å | b: 122.270 Å | c: 314.100 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.90 Å | Reflections | 53778 | Test set | 2000 (3.7%) | ||
R | 0.2280 | R-free | 0.2690 | ||||
According to PDB-REDO | |||||||
Resolution | 2.90 Å | Reflections | 53778 | Test set | 2000 (3.7%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2377 | 0.2288 |
R-free | 0.2793 | 0.2493 |
Bond length RMS Z-score | 0.183 | 0.474 |
Bond angle RMS Z-score | 0.366 | 0.760 |
Model quality | ||
Ramachandran plot normality | -4.025 9 | -1.155 49 |
Rotamer normality | -2.891 42 | -3.892 27 |
Coarse packing | 1.164 96 | 1.616 98 |
Fine packing | 0.184 86 | 0.861 94 |
Bump severity | 0.088 11 | 0.047 20 |
Hydrogen bond satisfaction | 0.902 53 | 0.906 58 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 20 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 31 |
Chiralities fixed | 0 |
Residues fitting density better | 55 |
Residues fitting density worse | 23 |