This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
F9 pilus adhesin FmlH lectin domain from E. coli UTI89 co-crystallized with TF antigen |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | C 2 2 21 | a: 67.411 Å | b: 78.140 Å | c: 105.540 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.10 Å | Reflections | 16538 | Test set | 844 (5.1%) | ||
R | 0.2250 | R-free | 0.2590 | ||||
According to PDB-REDO | |||||||
Resolution | 2.10 Å | Reflections | 16538 | Test set | 844 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2397 | 0.2217 |
R-free | 0.2664 | 0.2660 |
Bond length RMS Z-score | 0.251 | 0.542 |
Bond angle RMS Z-score | 0.483 | 0.741 |
Model quality | ||
Ramachandran plot normality | -0.475 68 | -0.393 71 |
Rotamer normality | -0.830 80 | -2.299 52 |
Coarse packing | -0.124 55 | -0.161 53 |
Fine packing | -1.621 27 | -1.413 35 |
Bump severity | 0.008 64 | 0.005 74 |
Hydrogen bond satisfaction | 0.923 80 | 0.911 65 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 5 |
Side chains flipped | 7 |
Waters removed | 9 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 0 |