This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Human group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 21 21 21 | a: 37.985 Å | b: 39.821 Å | c: 119.814 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.40 Å | Reflections | 36107 | Test set | 1739 (4.8%) | ||
R | 0.1410 | R-free | 0.1740 | ||||
According to PDB-REDO | |||||||
Resolution | 1.40 Å | Reflections | 36107 | Test set | 1739 (4.8%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1484 | 0.1333 |
R-free | 0.1817 | 0.1665 |
Bond length RMS Z-score | 0.274 | 0.555 |
Bond angle RMS Z-score | 0.629 | 0.734 |
Model quality | ||
Ramachandran plot normality | -0.381 71 | -0.176 76 |
Rotamer normality | 1.113 99 | 0.800 97 |
Coarse packing | 0.379 79 | 0.347 78 |
Fine packing | -2.057 13 | -1.863 18 |
Bump severity | 0.006 70 | 0.014 49 |
Hydrogen bond satisfaction | 0.910 64 | 0.902 53 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 3 |
Side chains flipped | 0 |
Waters removed | 21 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 8 |
Residues fitting density worse | 0 |