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Crystal structure of the A/Hong Kong/1/1968 (H3N2) influenza virus hemagglutinin G225L/L226S mutant in complex with 3'-SLN |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | C 1 2 1 | a: 209.960 Å | b: 131.235 Å | c: 72.250 Å | α: 90.00° | β: 98.62° | γ: 90.00° |
Resolution | 2.95 Å | Reflections | 41818 | Test set | 2104 (5.0%) | ||
R | 0.2020 | R-free | 0.2280 | ||||
According to PDB-REDO | |||||||
Resolution | 2.90 Å | Reflections | 41818 | Test set | 2104 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2020 | 0.2122 |
R-free | 0.2274 | 0.2459 |
Bond length RMS Z-score | 0.392 | 0.507 |
Bond angle RMS Z-score | 0.640 | 0.724 |
Model quality | ||
Ramachandran plot normality | -2.294 25 | -2.419 23 |
Rotamer normality | -2.273 53 | -2.788 43 |
Coarse packing | -0.885 20 | -0.818 22 |
Fine packing | -1.252 42 | -1.167 46 |
Bump severity | 0.457 2 | 0.197 5 |
Hydrogen bond satisfaction | 0.848 13 | 0.859 16 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 32 |
Side chains flipped | 0 |
Waters removed | 1 |
Peptides flipped | 6 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |