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LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH TN-PEPTIDE |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 54.378 Å | b: 46.159 Å | c: 92.107 Å | α: 90.00° | β: 92.56° | γ: 90.00° |
Resolution | 1.35 Å | Reflections | 96703 | Test set | 2927 (3.0%) | ||
R | 0.1053 | R-free | 0.1407 | ||||
According to PDB-REDO | |||||||
Resolution | 1.35 Å | Reflections | 96703 | Test set | 2927 (3.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1050 | 0.1179 |
R-free | 0.1409 | 0.1439 |
Bond length RMS Z-score | 2.006 | 0.564 |
Bond angle RMS Z-score | 1.218 | 0.714 |
Model quality | ||
Ramachandran plot normality | -0.365 73 | -0.059 81 |
Rotamer normality | 0.611 95 | 1.148 98 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 1 |
Waters removed | 89 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 4 |
Residues fitting density worse | 24 |