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IMPa metallopeptidase in complex with T-antigen |
This entry was created with PDB-REDO version 8.03. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 99.410 Å | b: 133.100 Å | c: 103.780 Å | α: 90.00° | β: 103.12° | γ: 90.00° |
Resolution | 2.40 Å | Reflections | 102258 | Test set | 5027 (4.9%) | ||
R | 0.2012 | R-free | 0.2542 | ||||
According to PDB-REDO | |||||||
Resolution | 2.40 Å | Reflections | 102258 | Test set | 5027 (4.9%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2016 | 0.2024 |
R-free | 0.2547 | 0.2474 |
Bond length RMS Z-score | 0.819 | 0.396 |
Bond angle RMS Z-score | 0.756 | 0.577 |
Model quality | ||
Ramachandran plot normality | -2.412 23 | -1.824 33 |
Rotamer normality | -2.288 52 | -1.358 71 |
Coarse packing | 0.520 83 | 0.547 84 |
Fine packing | -1.655 25 | -1.530 30 |
Bump severity | 0.012 53 | 0.019 41 |
Hydrogen bond satisfaction | 0.914 70 | 0.915 71 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 33 |
Side chains flipped | 0 |
Waters removed | 10 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |