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X-ray structure of RSL lectin in complex with sialyl lewis X tetrasaccharide |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 36.766 Å | b: 83.163 Å | c: 90.697 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.70 Å | Reflections | 31018 | Test set | 1498 (4.8%) | ||
R | 0.1508 | R-free | 0.1867 | ||||
According to PDB-REDO | |||||||
Resolution | 1.70 Å | Reflections | 31018 | Test set | 1498 (4.8%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1508 | 0.1485 |
R-free | 0.1860 | 0.1821 |
Bond length RMS Z-score | 1.519 | 0.687 |
Bond angle RMS Z-score | 1.050 | 0.858 |
Model quality | ||
Ramachandran plot normality | 0.296 87 | 0.628 92 |
Rotamer normality | 0.844 97 | 1.309 99 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 3 |
Side chains flipped | 5 |
Waters removed | 11 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |