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Crystal structure of an SH2-kinase domain construct of c-Abl tyrosine kinase |
This entry was created with PDB-REDO version 7.36. |
From original header | |||||||
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Spacegroup | P 21 21 2 | a: 114.118 Å | b: 125.449 Å | c: 56.232 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.89 Å | Reflections | 18657 | Test set | 958 (5.1%) | ||
R | 0.2310 | R-free | 0.2590 | ||||
According to PDB-REDO | |||||||
Resolution | 2.89 Å | Reflections | 18657 | Test set | 958 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2347 | 0.2115 |
R-free | 0.2572 | 0.2626 |
Bond length RMS Z-score | 0.226 | 0.424 |
Bond angle RMS Z-score | 0.481 | 0.704 |
Model quality | ||
Ramachandran plot normality | -2.321 24 | -2.037 29 |
Rotamer normality | -1.371 70 | -2.037 57 |
Coarse packing | -0.415 40 | -0.413 40 |
Fine packing | 0.215 86 | 0.478 90 |
Bump severity | 0.033 27 | 0.009 61 |
Hydrogen bond satisfaction | 0.866 19 | 0.868 20 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 7 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 3 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 1 |