This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin in complex with 6SO4-3SLN |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 63 2 2 | a: 97.289 Å | b: 97.289 Å | c: 348.267 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 3.00 Å | Reflections | 20455 | Test set | 1050 (5.1%) | ||
R | 0.2070 | R-free | 0.2508 | ||||
According to PDB-REDO | |||||||
Resolution | 3.00 Å | Reflections | 20455 | Test set | 1050 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2135 | 0.2129 |
R-free | 0.2574 R-free was considered biased, the estimated unbiased R-free was used | 0.2394 |
Bond length RMS Z-score | 0.718 | 0.247 |
Bond angle RMS Z-score | 0.727 | 0.504 |
Model quality | ||
Ramachandran plot normality | -3.898 10 | -3.118 16 |
Rotamer normality | -3.269 28 | -2.614 39 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 2 |
Waters removed | 1 |
Peptides flipped | 3 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |