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Structure of the A_Equine_Richmond_07 H3 haemagglutinin in complex with Sialyl Lewis X |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 79.296 Å | b: 129.794 Å | c: 193.634 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.70 Å | Reflections | 55072 | Test set | 2789 (5.1%) | ||
R | 0.1977 | R-free | 0.2559 | ||||
According to PDB-REDO | |||||||
Resolution | 2.70 Å | Reflections | 55072 | Test set | 2789 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2024 | 0.1926 |
R-free | 0.2582 | 0.2371 |
Bond length RMS Z-score | 0.614 | 0.284 |
Bond angle RMS Z-score | 0.652 | 0.501 |
Model quality | ||
Ramachandran plot normality | -2.598 22 | -2.080 30 |
Rotamer normality | -3.307 27 | -1.502 61 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 36 |
Side chains flipped | 4 |
Waters removed | 33 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 2 |
Residues fitting density worse | 2 |