Crystal structure of monoclonal antibody against neuroblastoma associated antigen. |
This entry was created with PDB-REDO version 8.08. |
From original header | |||||||
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Spacegroup | P 1 | a: 58.087 Å | b: 61.089 Å | c: 65.358 Å | α: 107.79° | β: 113.43° | γ: 95.68° |
Resolution | 1.55 Å | Reflections | 99733 | Test set | 4981 (5.0%) | ||
R | 0.1663 | R-free | 0.2064 | ||||
According to PDB-REDO | |||||||
Resolution | 1.55 Å | Reflections | 99733 | Test set | 4981 (5.0%) | ||
Twin | false | Radiation damage | 88 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1662 | 0.1663 |
R-free | 0.2065 | 0.1971 |
Bond length RMS Z-score | 1.598 | 0.706 |
Bond angle RMS Z-score | 1.169 | 0.792 |
Model quality | ||
Ramachandran plot normality | -0.214 77 | -0.066 81 |
Rotamer normality | -0.499 82 | 0.352 93 |
Coarse packing | 0.261 61 | 0.516 71 |
Fine packing | 0.735 93 | 1.148 96 |
Bump severity | 0.002 85 | 0.003 81 |
Hydrogen bond satisfaction | 0.912 66 | 0.920 77 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 35 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 0 |