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CRYSTAL STRUCTURE OF SUGAR TRANSPORTER BL01359 FROM Bacillus licheniformis, TARGET EFI-510856, IN COMPLEX WITH STACHYOSE |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 74.332 Å | b: 85.916 Å | c: 132.580 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.15 Å | Reflections | 46946 | Test set | 1405 (3.0%) | ||
R | 0.1940 | R-free | 0.2720 | ||||
According to PDB-REDO | |||||||
Resolution | 2.15 Å | Reflections | 46946 | Test set | 1405 (3.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1960 | 0.2050 |
R-free | 0.2738 | 0.2557 |
Bond length RMS Z-score | 0.404 | 0.320 |
Bond angle RMS Z-score | 0.604 | 0.549 |
Model quality | ||
Ramachandran plot normality | -2.464 22 | -1.142 49 |
Rotamer normality | -2.589 47 | -1.176 74 |
Coarse packing | -0.327 45 | -0.271 48 |
Fine packing | -1.696 24 | -1.471 33 |
Bump severity | 0.062 16 | 0.060 16 |
Hydrogen bond satisfaction | 0.871 22 | 0.874 24 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 4 |
Waters removed | 23 |
Peptides flipped | 5 |
Chiralities fixed | 0 |
Residues fitting density better | 2 |
Residues fitting density worse | 1 |