This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
1.93 Angstrom Crystal Structure of Superantigen-like Protein from Staphylococcus aureus in Complex with Sialyl-Lewis X. |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 21 21 21 | a: 42.640 Å | b: 108.199 Å | c: 167.655 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.93 Å | Reflections | 59255 | Test set | 2997 (5.1%) | ||
R | 0.1690 | R-free | 0.2180 | ||||
According to PDB-REDO | |||||||
Resolution | 1.93 Å | Reflections | 59255 | Test set | 2997 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1677 | 0.1625 |
R-free | 0.2174 | 0.2082 |
Bond length RMS Z-score | 0.526 | 0.661 |
Bond angle RMS Z-score | 0.750 | 0.807 |
Model quality | ||
Ramachandran plot normality | -0.899 56 | -0.063 79 |
Rotamer normality | 0.546 96 | -0.517 85 |
Coarse packing | -0.215 51 | -0.196 51 |
Fine packing | -1.273 41 | -1.274 41 |
Bump severity | 0.125 9 | 0.124 9 |
Hydrogen bond satisfaction | 0.908 61 | 0.908 61 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 0 |
Waters removed | 46 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 9 |
Residues fitting density worse | 0 |