This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Structure of the E502A variant of sacteLam55A from Streptomyces sp. SirexAA-E in complex with glucose |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 1 21 1 | a: 53.939 Å | b: 100.055 Å | c: 99.556 Å | α: 90.00° | β: 92.31° | γ: 90.00° |
Resolution | 1.75 Å | Reflections | 104913 | Test set | 5256 (5.0%) | ||
R | 0.1410 | R-free | 0.1720 | ||||
According to PDB-REDO | |||||||
Resolution | 1.75 Å | Reflections | 104913 | Test set | 5256 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1386 | 0.1310 |
R-free | 0.1651 | 0.1565 |
Bond length RMS Z-score | 0.640 | 0.697 |
Bond angle RMS Z-score | 0.728 | 0.815 |
Model quality | ||
Ramachandran plot normality | -1.417 42 | -1.348 44 |
Rotamer normality | -0.154 90 | 0.089 93 |
Coarse packing | 0.382 79 | 0.330 77 |
Fine packing | -1.954 15 | -1.949 16 |
Bump severity | 0.006 70 | 0.005 74 |
Hydrogen bond satisfaction | 0.907 60 | 0.903 54 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 15 |
Side chains flipped | 0 |
Waters removed | 59 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 2 |
Residues fitting density worse | 0 |