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BEL beta-trefoil complex with galactose |
This entry was created with PDB-REDO version 8.03. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 66.400 Å | b: 70.010 Å | c: 71.630 Å | α: 90.00° | β: 106.57° | γ: 90.00° |
Resolution | 1.57 Å | Reflections | 83501 | Test set | 4201 (5.0%) | ||
R | 0.1992 | R-free | 0.2239 | ||||
According to PDB-REDO | |||||||
Resolution | 1.57 Å | Reflections | 83501 | Test set | 4201 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1933 | 0.1754 |
R-free | 0.2149 | 0.2031 |
Bond length RMS Z-score | 0.659 | 0.762 |
Bond angle RMS Z-score | 0.673 | 0.782 |
Model quality | ||
Ramachandran plot normality | -2.263 25 | -1.990 30 |
Rotamer normality | 1.111 98 | 0.926 98 |
Coarse packing | 0.465 82 | 0.440 81 |
Fine packing | -1.657 25 | -1.490 32 |
Bump severity | 0.006 70 | 0.007 67 |
Hydrogen bond satisfaction | 0.890 38 | 0.896 45 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 20 |
Side chains flipped | 0 |
Waters removed | 1 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 12 |
Residues fitting density worse | 0 |