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Active-site mutant of potato endo-1,3-beta-glucanase in complex with laminaratriose and laminaratetrose |
This entry was created with PDB-REDO version 8.03. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 55.307 Å | b: 49.202 Å | c: 57.431 Å | α: 90.00° | β: 98.84° | γ: 90.00° |
Resolution | 1.55 Å | Reflections | 44352 | Test set | 1139 (2.6%) | ||
R | 0.1507 | R-free | 0.1806 | ||||
According to PDB-REDO | |||||||
Resolution | 1.55 Å | Reflections | 44352 | Test set | 1139 (2.6%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1527 | 0.1547 |
R-free | 0.1810 | 0.1817 |
Bond length RMS Z-score | 1.177 | 0.614 |
Bond angle RMS Z-score | 0.952 | 0.734 |
Model quality | ||
Ramachandran plot normality | -0.161 76 | -0.219 75 |
Rotamer normality | 0.821 98 | 1.178 99 |
Coarse packing | 0.945 93 | 0.908 93 |
Fine packing | -2.337 8 | -2.342 7 |
Bump severity | 0.003 82 | 0.002 87 |
Hydrogen bond satisfaction | 0.889 37 | 0.891 39 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 6 |
Side chains flipped | 0 |
Waters removed | 5 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |