This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
mouse SMP30/GNL-1,5-AG complex |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 31 2 1 | a: 102.587 Å | b: 102.587 Å | c: 149.706 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 1.70 Å | Reflections | 100497 | Test set | 5024 (5.0%) | ||
R | 0.1705 | R-free | 0.1895 | ||||
According to PDB-REDO | |||||||
Resolution | 1.70 Å | Reflections | 100497 | Test set | 5024 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1680 | 0.1251 |
R-free | 0.1852 | 0.1501 |
Bond length RMS Z-score | 0.725 | 0.837 |
Bond angle RMS Z-score | 0.684 | 0.749 |
Model quality | ||
Ramachandran plot normality | -0.686 62 | -0.538 66 |
Rotamer normality | -0.671 83 | 0.175 94 |
Coarse packing | 0.793 90 | 0.943 93 |
Fine packing | -1.062 50 | -0.836 59 |
Bump severity | 0.004 78 | 0.012 53 |
Hydrogen bond satisfaction | 0.886 34 | 0.888 36 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 9 |
Side chains flipped | 14 |
Waters removed | 18 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 129 |
Residues fitting density worse | 0 |