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CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH L-GALACTOPYRANOSE. |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 80.030 Å | b: 70.440 Å | c: 117.800 Å | α: 90.00° | β: 108.34° | γ: 90.00° |
Resolution | 1.76 Å | Reflections | 121048 | Test set | 6078 (5.0%) | ||
R | 0.1537 | R-free | 0.1778 | ||||
According to PDB-REDO | |||||||
Resolution | 1.76 Å | Reflections | 121048 | Test set | 6078 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1559 | 0.1494 |
R-free | 0.1790 | 0.1747 |
Bond length RMS Z-score | 1.037 | 0.744 |
Bond angle RMS Z-score | 0.922 | 0.860 |
Model quality | ||
Ramachandran plot normality | -0.705 64 | -0.686 64 |
Rotamer normality | -1.007 72 | -0.728 78 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 36 |
Side chains flipped | 5 |
Waters removed | 15 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |