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Structure of BambL lectin from Burkholderia ambifaria |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 45.110 Å | b: 47.250 Å | c: 98.330 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.60 Å | Reflections | 26558 | Test set | 1334 (5.0%) | ||
R | 0.1430 | R-free | 0.1880 | ||||
According to PDB-REDO | |||||||
Resolution | 1.60 Å | Reflections | 26558 | Test set | 1334 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1409 | 0.1420 |
R-free | 0.1819 | 0.1776 |
Bond length RMS Z-score | 0.649 | 0.719 |
Bond angle RMS Z-score | 0.756 | 0.814 |
Model quality | ||
Ramachandran plot normality | -0.401 70 | -0.091 78 |
Rotamer normality | -0.349 88 | -0.263 89 |
Coarse packing | 1.363 97 | 1.321 97 |
Fine packing | -1.972 15 | -1.862 18 |
Bump severity | 0.000 96 | 0.001 92 |
Hydrogen bond satisfaction | 0.879 28 | 0.875 25 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 5 |
Side chains flipped | 0 |
Waters removed | 8 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |