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Lectin Domain of Lectinolysin complexed with Lewis B Antigen |
This entry was created with PDB-REDO version 7.36. |
From original header | |||||||
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Spacegroup | P 43 21 2 | a: 67.010 Å | b: 67.010 Å | c: 97.650 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.00 Å | Reflections | 15595 | Test set | 787 (5.0%) | ||
R | 0.2020 | R-free | 0.2370 | ||||
According to PDB-REDO | |||||||
Resolution | 2.00 Å | Reflections | 15595 | Test set | 787 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1955 | 0.1895 |
R-free | 0.2362 | 0.2214 |
Bond length RMS Z-score | 0.718 | 0.640 |
Bond angle RMS Z-score | 0.728 | 0.777 |
Model quality | ||
Ramachandran plot normality | 0.180 84 | 0.023 81 |
Rotamer normality | -1.864 61 | -1.652 65 |
Coarse packing | 1.002 94 | 0.984 94 |
Fine packing | -0.802 61 | -0.677 65 |
Bump severity | 0.005 74 | 0.001 92 |
Hydrogen bond satisfaction | 0.900 50 | 0.896 45 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 6 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |