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Lectin Domain of Lectinolysin complexed with Fucose |
This entry was created with PDB-REDO version 8.01. |
From original header | |||||||
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Spacegroup | P 43 21 2 | a: 67.010 Å | b: 67.010 Å | c: 97.800 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.90 Å | Reflections | 17956 | Test set | 916 (5.1%) | ||
R | 0.1995 | R-free | 0.2469 | ||||
According to PDB-REDO | |||||||
Resolution | 1.90 Å | Reflections | 17956 | Test set | 916 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1973 | 0.1904 |
R-free | 0.2397 | 0.2249 |
Bond length RMS Z-score | 0.734 | 0.475 |
Bond angle RMS Z-score | 0.753 | 0.790 |
Model quality | ||
Ramachandran plot normality | -0.619 64 | -0.481 68 |
Rotamer normality | -1.664 65 | -0.805 81 |
Coarse packing | 1.076 95 | 1.130 95 |
Fine packing | -0.806 61 | -0.720 64 |
Bump severity | 0.039 23 | 0.005 74 |
Hydrogen bond satisfaction | 0.871 22 | 0.882 30 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 7 |
Side chains flipped | 0 |
Waters removed | 2 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |