Ferric Horse Heart Myoglobin; H64V mutant |
This entry was created with PDB-REDO version 8.08. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 21 21 2 | a: 30.639 Å | b: 119.236 Å | c: 56.677 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.00 Å | Reflections | 14710 | Test set | 746 (5.1%) | ||
R | 0.1860 | R-free | 0.2373 | ||||
According to PDB-REDO | |||||||
Resolution | 2.00 Å | Reflections | 14710 | Test set | 746 (5.1%) | ||
Twin | false | Radiation damage | 93 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1835 | 0.1787 |
R-free | 0.2337 | 0.2159 |
Bond length RMS Z-score | 1.849 | 0.576 |
Bond angle RMS Z-score | 1.156 | 0.666 |
Model quality | ||
Ramachandran plot normality | -2.328 26 | -0.884 59 |
Rotamer normality | -3.245 28 | -2.251 46 |
Coarse packing | 2.493 99 | 2.599 99 |
Fine packing | 0.303 88 | -0.023 82 |
Bump severity | 0.008 62 | 0.008 62 |
Hydrogen bond satisfaction | 0.939 93 | 0.940 93 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 6 |
Side chains flipped | 0 |
Waters removed | 1 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |