This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
The crystal structure of human ABL2 in complex with GLEEVEC |
This entry was created with PDB-REDO version 7.00. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | C 2 2 21 | a: 88.460 Å | b: 99.440 Å | c: 87.810 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.05 Å | Reflections | 24469 | Test set | 1244 (5.1%) | ||
R | 0.1890 | R-free | 0.2260 | ||||
According to PDB-REDO | |||||||
Resolution | 2.05 Å | Reflections | 24469 | Test set | 1244 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2021 | 0.1838 |
R-free | 0.2348 | 0.2174 |
Bond length RMS Z-score | 0.544 | 0.692 |
Bond angle RMS Z-score | 0.689 | 0.811 |
Model quality | ||
Ramachandran plot normality | -1.234 38 | -1.024 44 |
Rotamer normality | -1.659 48 | -1.481 52 |
Coarse packing | -1.235 N/A | -1.098 N/A |
Fine packing | -0.831 60 | -0.630 68 |
Bump severity | 0.014 70 | 0.005 90 |
Hydrogen bond satisfaction | 0.894 44 | 0.880 33 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 0 |
Side chains flipped | 9 |
Waters removed | 2 |
Peptides flipped | 1 |
Chiralities fixed | 2 |
Residues fitting density better | 6 |
Residues fitting density worse | 0 |