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A Src-like Inactive Conformation in the Abl Tyrosine Kinase Domain |
This entry was created with PDB-REDO version 8.01. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 62.586 Å | b: 78.440 Å | c: 141.609 Å | α: 90.00° | β: 90.11° | γ: 90.00° |
Resolution | 1.80 Å | Reflections | 117589 | Test set | 11279 (9.6%) | ||
R | 0.2190 | R-free | 0.2440 | ||||
According to PDB-REDO | |||||||
Resolution | 1.83 Å | Reflections | 117589 | Test set | 11279 (9.6%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2081 | 0.1715 |
R-free | 0.2323 | 0.2012 |
Bond length RMS Z-score | 0.269 | 0.559 |
Bond angle RMS Z-score | 0.602 | 0.759 |
Model quality | ||
Ramachandran plot normality | -1.567 38 | 0.274 85 |
Rotamer normality | -1.681 64 | -0.238 89 |
Coarse packing | 0.280 75 | 0.444 81 |
Fine packing | -0.495 71 | -0.116 80 |
Bump severity | 0.013 51 | 0.005 74 |
Hydrogen bond satisfaction | 0.914 70 | 0.912 67 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 10 |
Side chains flipped | 3 |
Waters removed | 52 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 191 |
Residues fitting density worse | 0 |