This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
CGL2 in complex with blood group H type II |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 31 1 2 | a: 113.613 Å | b: 113.613 Å | c: 122.329 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.10 Å | Reflections | 52686 | Test set | 2582 (4.9%) | ||
R | 0.2180 | R-free | 0.2470 | ||||
According to PDB-REDO | |||||||
Resolution | 2.08 Å | Reflections | 52686 | Test set | 2582 (4.9%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2131 | 0.1833 |
R-free | 0.2350 | 0.2045 |
Bond length RMS Z-score | 0.708 | 0.607 |
Bond angle RMS Z-score | 0.932 | 0.775 |
Model quality | ||
Ramachandran plot normality | -2.045 30 | 0.000 82 |
Rotamer normality | -1.648 58 | 0.508 95 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 25 |
Side chains flipped | 0 |
Waters removed | 26 |
Peptides flipped | 1 |
Chiralities fixed | 0 |
Residues fitting density better | 22 |
Residues fitting density worse | 0 |