V68N MYOGLOBIN OXY FORM |
This entry was created with PDB-REDO version 8.07. |
From original header | |||||||
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Spacegroup | I 1 21 1 | a: 122.180 Å | b: 42.120 Å | c: 42.120 Å | α: 90.00° | β: 92.62° | γ: 90.00° |
Resolution | 1.95 Å | Reflections | 32514 | Test set | 1638 (5.0%) | ||
R | 0.1908 | R-free | 0.2500 | ||||
According to PDB-REDO | |||||||
Resolution | 1.95 Å | Reflections | 32514 | Test set | 1638 (5.0%) | ||
Twin | false | Radiation damage | 18 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1763 | 0.1690 |
R-free | 0.2308 | 0.2065 |
Bond length RMS Z-score | 1.749 | 0.539 |
Bond angle RMS Z-score | 1.673 | 0.646 |
Model quality | ||
Ramachandran plot normality | -1.081 53 | 0.825 93 |
Rotamer normality | -2.293 45 | -0.934 73 |
Coarse packing | 2.535 99 | 2.760 99 |
Fine packing | 0.008 83 | 0.633 92 |
Bump severity | 0.031 27 | 0.013 49 |
Hydrogen bond satisfaction | 0.932 88 | 0.940 93 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 16 |
Side chains flipped | 3 |
Waters removed | 138 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 1 |